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APC: Gene Mutations and Cancer Risks

Mutations in the APC gene cause a condition called FAP (Familial Adenomatous Polyposis). Learn about the cancer risks associated with mutations in the APC gene. Stay up to date by signing up for our community newsletter.
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Cancer Risks in People with an Inherited APC Mutation


Familial adenomatous polyposis (FAP) and attenuated familial adenomatous
polyposis (AFAP)

Without surgery, almost all people with FAP will develop colorectal cancer in their lifetime, often before age 40. The estimated lifetime cancer risks for people with FAP are listed below. People with the attenuated form of FAP (AFAP) may have lower lifetime risks for cancer, and the degree of risk depends on the severity of their polyp history. Importantly, these risks do not apply to people who have the specific APC variant I1307K. See below for the specific cancer risks in people with that variant. 

Cancer Type

Estimated Lifetime Risk (to Age 80) with an FAP Mutation

Average Lifetime Risk for General Population

Average Age of Onset with FAP

Colon cancer without colectomy

Close to 100%

4.1%

39 years (median)

Rectal/pouch cancer after colectomy

  • Rectal cancer with IRA surgery: 10-30%
  • Pouch and ATZ/rectal cuff after IPAA surgery: 1-3%
  • 46-48 years
  • Unknown

Duodenum or periampullary cancer

<1-10%

50-52 years

Gastric

0.1-7.1%

0.8%

52-57 years

Small bowel cancer (beyond the duodenum)

<1%

0.3%

43 years

Thyroid (mostly papillary thyroid carcinoma)

1.2-12%

1.2%

26-44 years

Intra-abdominal desmoid tumors

10 - 24% (more common with mutations at the 3' end of the gene)

Rare

Brain/CNS (mostly medulloblastoma)

1%

0.6%

18 years

Hepatoblastoma

0.4-2.5% (usually before age 5)

Very rare

18-33 months

Source: NCCN Guidelines: Genetic/Familial High-Risk Assessment: Colorectal, Endometrial, and Gastric vs. 1 2024

APC variant I1307K 

People with an I1307K variant in the APC gene do not develop FAP. Unlike people with FAP, people with the APC variant I1307K have only a slightly elevated risk for colorectal cancer above the general population. The lifetime risk for colorectal cancer with this variant is estimated to be about 5-10%. The I1307K variant is not known to increase risk for other cancers.

Last updated August 17, 2024